SCOPe

[A][a](A)

Classes: Alpha and beta proteins (a+b)
Folds: Phospholipase D/nuclease
Superfamilies: Phospholipase D/nuclease
Families: Tyrosyl-DNA phosphodiesterase TDP1
Protein Domains: Tyrosyl-DNA phosphodiesterase TDP1
Species: Human (Homo sapiens) [TaxId: 9606]

PDB Entries

PDB ID	OPM	Mutant	Chain Formula			Resolution	HETNAM
PDB ID	OPM	Mutant	Amino Acid sequence	SCOPe Family Level	CATH Homology Level	Resolution	HETNAM

1jy1			[A]	[A]	[A]	1.69	MSE:SELENOMETHIONINE
1mu7			[A]	[A]	[A]	2	GOL:GLYCEROL WO4:TUNGSTATE(VI)ION
1mu9			[A]	[A]	[A]	2.05	GOL:GLYCEROL VO4:VANADATE ION
1nop			[A][a](A)	[A][a](A)	[A][a](A)	2.3	VO4:VANADATE ION
1qzq			[A2]	[A2]	[A2]	2.4
1rff			[A][a](A)	[A][a](A)	[A][a](A)	1.7	SPM:SPERMINE VO4:VANADATE ION
1rfi			[A][a](A)	[A][a](A)	[A][a](A)	2.2	SPM:SPERMINE VO4:VANADATE ION
1rg1			[A](A)	[A](A)	[A](A)	2.1	OTS:4-(2S-AMINO-1-HYDROXYETHYL)PHENOL SPM:SPERMINE VO4:VANADATE ION
1rg2			[A](A)	[A](A)	[A](A)	2.1	OTR:4-(2R-AMINO-1-HYDROXYETHYL)PHENOL OTS:4-(2S-AMINO-1-HYDROXYETHYL)PHENOL SPM:SPERMINE VO4:VANADATE ION
1rgt			[A](A)	[A](A)	[A](A)	2	OTR:4-(2R-AMINO-1-HYDROXYETHYL)PHENOL OTS:4-(2S-AMINO-1-HYDROXYETHYL)PHENOL SPM:SPERMINE VO4:VANADATE ION
1rgu			[A](A)	[A](A)	[A](A)	2.22	OTS:4-(2S-AMINO-1-HYDROXYETHYL)PHENOL SPM:SPERMINE VO4:VANADATE ION
1rh0			[A](A)	[A](A)	[A](A)	2.3	OTS:4-(2S-AMINO-1-HYDROXYETHYL)PHENOL SPM:SPERMINE VO4:VANADATE ION
6dhu			[A]	[A]	[A]	1.63	EDO:1,2-ETHANEDIOL GHM:BENZENE-1,2,4-TRICARBOXYLIC ACID
6die			[A]	[A]	[A]	1.78	EDO:1,2-ETHANEDIOL GHM:BENZENE-1,2,4-TRICARBOXYLIC ACID
6dih			[A]	[A]	[A]	1.78	EDO:1,2-ETHANEDIOL GJS:4-HYDROXYBENZENE-1,2-DICARBOXYLIC ACID
6dim			[A]	[A]	[A]	1.81	EDO:1,2-ETHANEDIOL GJP:4-HYDROXYQUINOLINE-3-CARBOXYLIC ACID
6djd			[A]	[A]	[A]	1.78	EDO:1,2-ETHANEDIOL GJP:4-HYDROXYQUINOLINE-3-CARBOXYLIC ACID
6dje			[A]	[A]	[A]	1.71	EDO:1,2-ETHANEDIOL GNY:4-HYDROXY-8-(PROPAN-2-YL)QUINOLINE-3-CARBOXYLIC ACID
6djf			[A]	[A]	[A]	1.67	EDO:1,2-ETHANEDIOL GNV:4-HYDROXYQUINOLINE-3,8-DICARBOXYLIC ACID
6djg			[A]	[A]	[A]	1.88	EDO:1,2-ETHANEDIOL GNJ:4-HYDROXY-8-SULFOQUINOLINE-3-CARBOXYLIC ACID
6djh			[A]	[A]	[A]	1.92	EDO:1,2-ETHANEDIOL GNM:8-BROMO-4-OXO-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID
6dji			[A]	[A]	[A]	1.75	EDO:1,2-ETHANEDIOL GOG:3-HYDROXYBENZENE-1,2-DICARBOXYLIC ACID
6djj			[A]	[A]	[A]	1.74	EDO:1,2-ETHANEDIOL GM7:4-AMINOBENZENE-1,2-DICARBOXYLIC ACID
6mj5			[A]	[A]	[A]	1.85	EDO:1,2-ETHANEDIOL JTA:4-HYDROXY-8-NITROQUINOLINE-3-CARBOXYLIC ACID
6myz			[A]	[A]	[A]	1.66	EDO:1,2-ETHANEDIOL K7D:4-OXO-8-PHENYL-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID
6mz0			[A]	[A]	[A]	1.97	EDO:1,2-ETHANEDIOL K7A:5-HYDROXYPYRAZINE-2,3-DICARBOXYLIC ACID
6n0d			[A]	[A]	[A]	1.45	EDO:1,2-ETHANEDIOL K8J:4-FLUOROBENZENE-1,2-DICARBOXYLIC ACID
6n0n			[A]	[A]	[A]	1.48	DMS:DIMETHYL SULFOXIDE EDO:1,2-ETHANEDIOL KAY:4-METHYLBENZENE-1,2-DICARBOXYLIC ACID
6n0o			[A]	[A]	[A]	1.94	EDO:1,2-ETHANEDIOL K8G:4-NITROBENZENE-1,2-DICARBOXYLIC ACID
6n0r			[A]	[A]	[A]	1.54	DMS:DIMETHYL SULFOXIDE EDO:1,2-ETHANEDIOL K8D:4-(METHYLAMINO)BENZENE-1,2-DICARBOXYLIC ACID
6n17			[A]	[A]	[A]	1.64	DMS:DIMETHYL SULFOXIDE EDO:1,2-ETHANEDIOL K8Y:4-[(3-CARBOXYPROPANOYL)AMINO]BENZENE-1,2-DICARBOXYLICACID
6n19			[A]	[A]	[A]	1.5	EDO:1,2-ETHANEDIOL K8V:4-[(4-CARBOXYBUTANOYL)AMINO]BENZENE-1,2-DICARBOXYLICACID
6w4r			[A]	[A]	[A]	1.82	EDO:1,2-ETHANEDIOL MPO:3[N-MORPHOLINO]PROPANE SULFONIC ACID SZV:4-{[2-(2-HYDROXYPHENYL)IMIDAZO[1,2-A]PYRAZIN-3-YL]AMINO}BENZENE-1,2-DICARBOXYLIC ACID
6w7j			[A]	[A]	[A]	1.49	EDO:1,2-ETHANEDIOL TGM:4-{[2-(2-HYDROXYPHENYL)IMIDAZO[1,2-A]PYRIDIN-3-YL]AMINO}BENZENE-1,2-DICARBOXYLIC ACID
6w7k			[A]	[A]	[A]	1.7	EDO:1,2-ETHANEDIOL TG7:4-[(2-PHENYLIMIDAZO[1,2-A]PYRIDIN-3-YL)AMINO]BENZENE-1,2-DICARBOXYLIC ACID
6w7l			[A]	[A]	[A]	1.86	EDO:1,2-ETHANEDIOL TGV:4-[(2-PHENYLIMIDAZO[1,2-A]PYRAZIN-3-YL)AMINO]BENZENE-1,2-DICARBOXYLIC ACID

^*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA

PDL